STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APL_2014ABC-type Fe3+-hydroxamate transport system, periplasmic component; Similar to Haemophilus parasuis FhuD. (279 aa)    
Predicted Functional Partners:
fhuB
Ferrichrome uptake protein fhuB; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.997
fhuC
Ferrichrome transport ATP-binding protein fhuC.
 
 0.996
APL_2016
Ferrioxamine B receptor precursor.
 
   
 0.852
APL_1793
Fe(III) dicitrate ABC transporter, ATP-binding protein.
 
 
 0.778
APL_1792
Fe(III) dicitrate ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.692
ompP1
Putative outer membrane protein precursor.
  
   
 0.486
znuA
High-affinity zinc uptake system protein ZnuA precursor.
      
 0.460
fkpA
Putative FKBP-type peptidyl-prolyl cis-trans isomerase.
      
 0.453
yfeA
Iron (chelated) ABC transporter, periplasmic-binding protein; Belongs to the bacterial solute-binding protein 9 family.
      
 0.422
Your Current Organism:
Actinobacillus pleuropneumoniae
NCBI taxonomy Id: 416269
Other names: A. pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae L20, Actinobacillus pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae serovar 5b strain L20
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