A0A1V6PT97 protein (Penicillium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6PT97

Uncharacterized protein. (578 aa)

Predicted Functional Partners:

A0A1V6QA70

0.626

A0A1V6QKG0

0.532

A0A1V6P6C1

0.512

A0A1V6P9B5

0.512

A0A1V6PP37

0.512

A0A1V6QM33

0.512

A0A1V6Q3B1

0.502

A0A1V6Q111

0.445

A0A1V6Q2E8

0.445

A0A1V6QI65

0.425

Your Current Organism:

Penicillium antarcticum

NCBI taxonomy Id: 416450
Other names: CBS 100492, FRR 4989, P. antarcticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6P6C1	A0A1V6P9B5	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.705
A0A1V6P6C1	A0A1V6PP37	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.707
A0A1V6P6C1	A0A1V6PT97	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.512
A0A1V6P6C1	A0A1V6Q111	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.420
A0A1V6P6C1	A0A1V6Q2E8	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.420
A0A1V6P6C1	A0A1V6Q3B1	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the OSBP family.	0.587
A0A1V6P6C1	A0A1V6QI65	ANK_REP_REGION domain-containing protein.	Serine/threonine-protein kinase.	0.576
A0A1V6P6C1	A0A1V6QM33	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.743
A0A1V6P9B5	A0A1V6P6C1	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.705
A0A1V6P9B5	A0A1V6PP37	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.705
A0A1V6P9B5	A0A1V6PT97	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.512
A0A1V6P9B5	A0A1V6Q111	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.420
A0A1V6P9B5	A0A1V6Q2E8	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.420
A0A1V6P9B5	A0A1V6Q3B1	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the OSBP family.	0.587
A0A1V6P9B5	A0A1V6QI65	ANK_REP_REGION domain-containing protein.	Serine/threonine-protein kinase.	0.576
A0A1V6P9B5	A0A1V6QM33	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.705
A0A1V6PP37	A0A1V6P6C1	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.707
A0A1V6PP37	A0A1V6P9B5	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.705
A0A1V6PP37	A0A1V6PT97	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.512
A0A1V6PP37	A0A1V6Q111	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.420