STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0043PFAM: LmbE family protein; KEGG: tte:TTE1933 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Tlet_0045
PFAM: glycoside hydrolase family 4; KEGG: tma:TM1281 6-phospho-beta-glucosidase.
 
  
  0.896
Tlet_0044
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: tma:TM1280 hypothetical protein.
 
     0.792
Tlet_0046
PFAM: major facilitator superfamily MFS_1; KEGG: tte:TTE1932 Na+/melibiose symporter and related transporters.
 
    0.782
Tlet_0047
TIGRFAM: putative methyltransferase; PFAM: putative RNA methylase; conserved hypothetical protein 95; KEGG: tma:TM1388 hypothetical protein.
       0.721
Tlet_0042
PFAM: sulfatase; KEGG: tma:TM1703 hypothetical protein.
       0.547
Tlet_1387
PFAM: glycoside hydrolase family 4; KEGG: tma:TM1834 alpha-glucosidase.
 
     0.476
Tlet_1131
PFAM: glycoside hydrolase family 4; KEGG: tma:TM1068 alpha-glucosidase, putative.
 
     0.435
Tlet_1714
PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: tma:TM0715 tRNA nucleotidyltransferase (CCA-adding enzyme); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.425
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.