STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0052TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: tma:TM0324 hypothetical protein. (427 aa)    
Predicted Functional Partners:
Tlet_0053
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rsq:Rsph17025_3259 hypothetical protein.
 
 
 0.992
Tlet_0054
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: tma:TM0322 ABC transporter, periplasmic substrate-binding protein, putative.
 
  
 0.930
Tlet_1451
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_3214 TRAP dicarboxylate transporter-DctP subunit.
 
  
 0.833
Tlet_0051
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: tma:TM0325 oxidoreductase, short chain dehydrogenase/reductase family.
      0.780
Tlet_0050
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tma:TM0326 transcriptional regulator, RpiR family.
       0.655
Tlet_0049
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tma:TM0327 phosphoglycerate dehydrogenase, putative.
       0.603
Tlet_0048
PFAM: carbohydrate kinase FGGY; KEGG: lac:LBA0354 gluconate kinase.
       0.441
Tlet_0060
PFAM: Transketolase domain protein; Transketolase central region; KEGG: tma:TM1762 transketolase.
   
   0.413
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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