STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0089PFAM: extracellular solute-binding protein family 1; KEGG: tma:TM1235 multiple sugar transport system substrate-binding protein. (420 aa)    
Predicted Functional Partners:
Tlet_0087
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1233 multiple sugar transport system permease protein.
 
  0.993
Tlet_0088
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1234 multiple sugar transport system permease protein.
 
   0.942
Tlet_0086
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tma:TM1232 multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.811
Tlet_0084
PFAM: glycosyl transferase family 2; KEGG: tma:TM1229 hypothetical protein.
 
     0.746
Tlet_0085
PFAM: glycoside hydrolase family 38; KEGG: tma:TM1231 alpha-mannosidase-related protein.
 
     0.715
Tlet_0082
PFAM: glycosyl transferase group 1; KEGG: tma:TM1230 hypothetical protein.
       0.644
Tlet_1219
PFAM: Radical SAM domain protein; KEGG: tma:TM1317 AstB/ChuR-related protein.
  
     0.627
Tlet_0083
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tma:TM1228 transcriptional regulator, RpiR family.
       0.618
Tlet_1816
PFAM: ATPase; KEGG: pab:PAB1597 hypothetical protein.
  
     0.603
Tlet_0349
KEGG: tma:TM0663 hypothetical protein.
 
     0.570
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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