STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0102Hypothetical protein; KEGG: pha:PSHAb0292 putative HNH endonuclease. (227 aa)    
Predicted Functional Partners:
Tlet_0106
PFAM: protein of unknown function DUF187; KEGG: cyb:CYB_0076 hypothetical protein.
 
     0.757
Tlet_1304
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: tma:TM0047 transposase, putative.
  
    0.725
Tlet_0105
KEGG: tte:TTE2409 hypothetical protein.
 
     0.688
Tlet_0107
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0812 multiple sugar transport system permease protein.
 
     0.513
Tlet_0108
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0811 multiple sugar transport system permease protein.
 
     0.502
Tlet_0111
N-acylglucosamine-6-phosphate 2-epimerase; PFAM: histidine biosynthesis protein; putative N-acetylmannosamine-6-phosphate epimerase; KEGG: gvi:glr2614 putative N-acylglucosamine-6-phosphate 2-epimerase.
 
     0.480
Tlet_0103
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE2419 transcriptional regulator.
       0.419
Tlet_0104
PFAM: ROK family protein; KEGG: sth:STH602 putative glucose kinase.
       0.419
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.