STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0182PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein. (321 aa)    
Predicted Functional Partners:
Tlet_0185
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: psb:Psyr_2570 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 0.989
Tlet_0358
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: tma:TM0112 simple sugar transport system permease protein.
 0.972
Tlet_0390
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ctc:CTC02349 ribose transport system permease protein rbsC.
 0.971
Tlet_1328
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: tma:TM0955 D-ribose transport system permease protein.
 0.969
Tlet_0184
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_3003 ABC transporter related.
 
 0.965
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.910
rbsA-2
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.907
Tlet_0391
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH03646 probable sugar ABC transporter, ATP-binding protein.
 
 0.903
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.901
Tlet_1421
PFAM: inner-membrane translocator; KEGG: rru:Rru_A2299 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.850
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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