STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0301PFAM: S-layer domain protein; KEGG: tma:TM1729 outer membrane protein. (404 aa)    
Predicted Functional Partners:
Tlet_1829
PFAM: polysaccharide pyruvyl transferase; KEGG: tma:TM0682 hypothetical protein.
  
     0.769
Tlet_0663
KEGG: tma:TM0942 hypothetical protein.
  
     0.761
Tlet_1516
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.739
Tlet_0491
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tma:TM1866 membrane bound protein LytR, putative.
 
   
 0.712
Tlet_0933
PFAM: permease YjgP/YjgQ family protein; OstA family protein; KEGG: tma:TM1735 hypothetical protein.
 
     0.709
Tlet_0989
KEGG: tma:TM1652 hypothetical protein.
  
    0.680
Tlet_1883
PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: tma:TM1117 general secretion pathway protein D, putative; Belongs to the bacterial secretin family.
  
     0.611
Tlet_0300
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: tma:TM1141 cytochrome C-type biogenesis protein, putative.
       0.528
Tlet_0299
KEGG: tma:TM1142 hypothetical protein.
       0.508
Tlet_0302
KEGG: tma:TM0639 hypothetical protein.
       0.503
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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