STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0357PFAM: ROK family protein; SMART: regulatory protein Crp; KEGG: tma:TM0110 transcriptional regulator, XylR-related. (378 aa)    
Predicted Functional Partners:
Tlet_0355
PFAM: glycoside hydrolase family 3 domain protein; KEGG: tma:TM0076 beta-glucosidase.
  
  
 0.750
Tlet_0356
PFAM: Acetyl xylan esterase; KEGG: tma:TM0077 acetylxylan esterase.
       0.710
Tlet_0352
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0073 putative oligopeptide transport system permease protein.
       0.677
Tlet_0353
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0074 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.670
Tlet_0354
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0075 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.670
Tlet_0351
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0072 putative oligopeptide transport system permease protein.
     
 0.637
Tlet_0359
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM0114 simple sugar transport system substrate-binding protein.
 
  
 0.531
Tlet_0358
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: tma:TM0112 simple sugar transport system permease protein.
  
  
 0.514
Tlet_0350
PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM0071 putative oligopeptide transport system substrate-binding protein.
     
 0.504
Tlet_0078
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: fnu:FN0555 transcriptional regulator, MerR family.
  
 
 0.485
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.