STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0403PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nca:Noca_3849 PHP C-terminal domain protein. (459 aa)    
Predicted Functional Partners:
Tlet_0401
PFAM: CBS domain containing protein; KEGG: tma:TM1140 acetoin utilization protein AcuB.
 
    0.510
Tlet_0404
PFAM: extracellular solute-binding protein family 1; KEGG: rxy:Rxyl_0621 extracellular solute-binding protein, family 1.
       0.483
Tlet_0407
PFAM: uncharacterised conserved protein UCP016719; KEGG: gtn:GTNG_1290 hypothetical protein.
 
     0.471
Tlet_0680
PFAM: ADP-ribosylation/Crystallin J1; KEGG: sma:SAV1919 hypothetical protein.
 
     0.466
Tlet_1387
PFAM: glycoside hydrolase family 4; KEGG: tma:TM1834 alpha-glucosidase.
 
     0.463
Tlet_1131
PFAM: glycoside hydrolase family 4; KEGG: tma:TM1068 alpha-glucosidase, putative.
 
     0.459
Tlet_0105
KEGG: tte:TTE2409 hypothetical protein.
  
     0.438
Tlet_0402
KEGG: sat:SYN_02414 Kunitz/bovine pancreatic trypsin inhibitor domain protein.
       0.429
Tlet_0406
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rxy:Rxyl_0623 binding-protein-dependent transport systems inner membrane component.
       0.405
Tlet_0405
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rxy:Rxyl_0622 binding-protein-dependent transport systems inner membrane component.
       0.402
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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