STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0551PFAM: ABC-2 type transporter; KEGG: tma:TM0388 putative ABC-2 type transport system permease protein. (388 aa)    
Predicted Functional Partners:
Tlet_0550
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0389 putative ABC-2 type transport system ATP-binding protein.
 
   
 0.936
Tlet_0552
PFAM: ABC-2 type transporter; KEGG: tma:TM0387 putative ABC-2 type transport system permease protein.
 
 
 
0.912
Tlet_0553
KEGG: tma:TM0518 hypothetical protein.
       0.752
Tlet_0549
PFAM: flavin reductase domain protein FMN-binding; KEGG: tma:TM0157 actinorhodin polyketide dimerase-related protein.
       0.548
Tlet_1041
PFAM: ABC-2 type transporter; KEGG: rxy:Rxyl_0406 ABC-2 type transporter.
 
 
  0.544
Tlet_0548
Hypothetical protein.
       0.537
Tlet_1235
PFAM: ABC-2 type transporter; KEGG: tde:TDE0701 hypothetical protein.
 
 
  0.520
Tlet_1438
PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM1223 putative oligopeptide transport system substrate-binding protein.
  
  
 0.489
Tlet_1716
PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM0460 putative oligopeptide transport system substrate-binding protein.
  
  
 0.463
Tlet_1066
PFAM: regulatory protein TetR; KEGG: fnu:FN0813 transcriptional regulator, TetR family.
 
  
 0.453
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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