STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0557TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: tma:TM0225 1-aminocyclopropane-1-carboxylate deaminase. (332 aa)    
Predicted Functional Partners:
Tlet_0460
Cystathionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: tvo:TVN0174 cystathionine gamma-lyase.
     
 0.911
Tlet_1859
PFAM: aminotransferase class I and II; KEGG: cac:CAC2970 PLP-dependent aminotransferase.
    
  0.906
Tlet_0558
PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: tma:TM1726 alanyl-tRNA synthetase-related protein.
       0.786
Tlet_0559
PFAM: protein of unknown function DUF401; KEGG: tma:TM0481 hypothetical protein.
       0.558
Tlet_0309
PFAM: FAD dependent oxidoreductase; KEGG: drm:Dred_1730 FAD dependent oxidoreductase.
 
   
 0.527
Tlet_0560
PFAM: protein of unknown function DUF47; KEGG: tma:TM0260 hypothetical protein.
       0.527
Tlet_0561
PFAM: phosphate transporter; KEGG: tma:TM0261 phosphate permease, putative.
     
 0.520
Tlet_0908
TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: bca:BCE_0308 aspartate racemase.
 
     0.417
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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