STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0718PFAM: aminotransferase class V; KEGG: chy:CHY_2199 cysteine desulfurase. (390 aa)    
Predicted Functional Partners:
Tlet_0717
PFAM: nitrogen-fixing NifU domain protein; KEGG: mba:Mbar_A1736 NifU protein.
 
 0.997
Tlet_0715
PFAM: nitrogen-fixing NifU domain protein; KEGG: mta:Moth_1651 nitrogen-fixing NifU-like.
 
 0.993
Tlet_0716
PFAM: aminotransferase class V; KEGG: cth:Cthe_0720 aminotransferase, class V.
 
  
 
0.978
Tlet_0328
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: smr:Smar_0789 UBA/ThiF-type NAD/FAD binding protein.
   
 0.962
Tlet_1317
PFAM: SirA family protein; regulatory protein ArsR; KEGG: tma:TM0978 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 
 0.808
Tlet_0719
Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
   
 
 0.773
Tlet_0145
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cdf:CD1278 RRF2-family transcriptional regulator.
  
  
 0.772
Tlet_1312
PFAM: SirA family protein; KEGG: tma:TM0983 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 
 0.772
Tlet_0714
PFAM: zinc/iron permease; KEGG: tma:TM1738 GufA protein.
  
    0.768
Tlet_0721
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1417 ABC transporter, ATP-binding protein.
 
  
 0.768
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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