STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0745PFAM: alpha/beta hydrolase fold domain-containing protein; KEGG: pfu:PF0480 lysophospholipase. (250 aa)    
Predicted Functional Partners:
Tlet_1520
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tma:TM0010 NADH dehydrogenase I chain F.
  
 
 0.968
Tlet_0953
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tma:TM1425 NADH dehydrogenase I chain F.
  
 
 0.822
Tlet_1518
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tma:TM0228 NADH dehydrogenase I chain F.
   
 
 0.820
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.790
Tlet_0954
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tma:TM1424 NADH dehydrogenase I chain E.
   
   0.789
Tlet_0957
NADH:ubiquinone oxidoreductase 24 kD subunit-like protein; KEGG: tma:TM1420 hypothetical protein.
   
   0.789
Tlet_1519
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sat:SYN_00153 NADH:ubiquinone oxidoreductase 24 kD subunit NuoE.
   
   0.789
Tlet_1522
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tma:TM0012 NADH dehydrogenase I chain E.
   
   0.789
Tlet_0743
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM1594 conserved hypothetical protein, GGDEF domain.
       0.787
Tlet_0742
PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tma:TM1595 hypothetical protein.
       0.786
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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