Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa)    
Predicted Functional Partners:
rpmB
PFAM: ribosomal protein L28; KEGG: tma:TM0255 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.991
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.991
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: tma:TM0150 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.990
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.990
rpmH
PFAM: ribosomal protein L34; KEGG: tma:TM1463a ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
 
 0.989
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.988
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
  
 
 0.988
rpsI
PFAM: ribosomal protein S9; KEGG: tma:TM1453 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.988
rpsP
PFAM: ribosomal protein S16; KEGG: tma:TM1566 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
Tlet_1977
PFAM: ribosomal protein L27; KEGG: tma:TM1456 50S ribosomal protein L27.
  
 
 0.985
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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