STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0804TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: tma:TM1468 hypothetical protein. (287 aa)    
Predicted Functional Partners:
Tlet_2011
PFAM: Dak phosphatase; KEGG: tma:TM1772 hypothetical protein.
 
 0.993
Tlet_0805
Hypothetical protein.
       0.789
Tlet_0806
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tte:TTE0518 HD-GYP domain.
       0.789
Tlet_0800
PFAM: inner-membrane translocator; KEGG: tma:TM1136 branched-chain amino acid transport system permease protein.
       0.545
Tlet_0801
PFAM: inner-membrane translocator; KEGG: tma:TM1137 branched-chain amino acid transport system permease protein.
       0.545
Tlet_0802
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1138 branched-chain amino acid transport system ATP-binding protein.
       0.545
Tlet_0803
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1139 branched-chain amino acid transport system ATP-binding protein.
       0.533
Tlet_0791
PFAM: helix-hairpin-helix motif; protein of unknown function DUF147; KEGG: tma:TM0200 hypothetical protein; Belongs to the DisA family.
  
    0.467
Tlet_0799
PFAM: Extracellular ligand-binding receptor; KEGG: tma:TM1135 branched-chain amino acid transport system substrate-binding protein.
       0.438
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.