STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0807PFAM: protein of unknown function DUF214; KEGG: tma:TM0351 conserved hypothetical protein. (404 aa)    
Predicted Functional Partners:
Tlet_0808
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0352 ABC transporter, ATP-binding protein.
 
 0.999
Tlet_1320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0705 ABC transporter, ATP-binding protein.
 
 0.993
Tlet_0809
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: tma:TM0353 hypothetical protein.
 
 
 0.991
Tlet_0021
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0239 ABC transporter related.
 
 
    0.900
Tlet_0484
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF0680 glutamine transport system ATP-binding protein.
 
 
    0.900
Tlet_0862
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3901 ABC transporter related.
 
 
    0.900
Tlet_0086
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tma:TM1232 multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
      0.899
Tlet_1353
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0339 putative sulfonate transport system ATP-binding protein.
 
      0.898
Tlet_1280
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tma:TM1276 putative multiple sugar transport system ATP-binding protein.
 
      0.897
Tlet_1342
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cpe:CPE1270 probable ABC transporter; Belongs to the ABC transporter superfamily.
 
      0.878
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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