STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0826Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: tte:TTE2588 Transcriptional regulator of sugar metabolism. (254 aa)    
Predicted Functional Partners:
Tlet_1061
PFAM: PfkB domain protein; KEGG: tma:TM0828 sugar kinase, PfkB family; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.796
Tlet_1709
PFAM: PfkB domain protein; KEGG: cno:NT01CX_0289 tagatose-6-phosphate kinase.
 
  
 0.786
Tlet_0824
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_0080 short-chain dehydrogenase/reductase SDR.
     
 0.746
Tlet_0825
KEGG: tma:TM0440 hypothetical protein.
       0.746
Tlet_0823
KEGG: tma:TM0442 hypothetical protein.
       0.726
Tlet_0822
Hypothetical protein.
       0.419
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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