STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0877PFAM: Auxin Efflux Carrier; KEGG: mla:Mlab_1647 hypothetical protein. (302 aa)    
Predicted Functional Partners:
Tlet_0836
Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: afu:AF1727 malate oxidoreductase (mae).
  
  
 0.819
Tlet_0878
Protein of unknown function DUF362; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: tma:TM0049 iron-sulfur cluster-binding protein.
 
     0.648
Tlet_0879
TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tma:TM0172 adenosylhomocysteinase.
       0.538
Tlet_0880
KEGG: tma:TM0767 maltodextrin glycosyltransferase.
       0.523
Tlet_0881
Hypothetical protein.
       0.517
Tlet_0882
KEGG: tma:TM0537 hypothetical protein.
       0.517
Tlet_0294
PFAM: methyltransferase small; KEGG: tma:TM0691 hypothetical protein.
  
    0.463
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.