STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0905PFAM: polysaccharide deacetylase; KEGG: cff:CFF8240_1782 polysaccharide deacetylase. (329 aa)    
Predicted Functional Partners:
Tlet_0904
Uncharacterized FlgJ-related protein-like protein; KEGG: pub:SAR11_0379 Bax protein (hydrolyses peptidoglycan).
 
     0.937
Tlet_1888
PFAM: glycosyl transferase family 2; KEGG: ctc:CTC02258 succinoglycan biosynthesis protein ExoA.
  
  
 0.738
Tlet_0906
Hypothetical protein.
       0.556
Tlet_0903
KEGG: neu:NE1602 bacterial general secretion pathway protein G.
       0.539
Tlet_0907
KEGG: tma:TM0945 hypothetical protein.
       0.457
Tlet_0909
PFAM: acriflavin resistance protein; KEGG: tma:TM0372 cation efflux system protein, putative.
  
    0.455
Tlet_0908
TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: bca:BCE_0308 aspartate racemase.
       0.446
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.