STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0968KEGG: tma:TM1239 hypothetical protein. (125 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.830
Tlet_0966
KEGG: tma:TM1392 hypothetical protein.
       0.786
Tlet_0969
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: tma:TM0513 ComM protein.
       0.784
Tlet_0965
PFAM: Appr-1-p processing domain protein; KEGG: tma:TM0508 putative ATPase.
       0.561
Tlet_0964
PFAM: OsmC family protein; KEGG: tma:TM0919 putative redox protein.
       0.547
Tlet_0970
Hypothetical protein.
       0.507
Tlet_1215
PFAM: protein of unknown function UPF0150; KEGG: tma:TM1321 hypothetical protein.
  
     0.473
Tlet_0685
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: tma:TM0733 sigma-B regulator, putative.
 
     0.447
Tlet_0963
PFAM: Phosphoglycerate mutase; KEGG: tma:TM1374 phosphoglycerate mutase.
       0.433
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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