STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_0969TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: tma:TM0513 ComM protein. (502 aa)    
Predicted Functional Partners:
Tlet_0292
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tma:TM0250 DNA processing chain A.
 
 0.934
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.785
Tlet_0968
KEGG: tma:TM1239 hypothetical protein.
       0.784
Tlet_0652
KEGG: tma:TM1584 comFC protein, putative.
 
  
 0.780
Tlet_0966
KEGG: tma:TM1392 hypothetical protein.
       0.773
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      0.757
Tlet_0965
PFAM: Appr-1-p processing domain protein; KEGG: tma:TM0508 putative ATPase.
       0.548
Tlet_0964
PFAM: OsmC family protein; KEGG: tma:TM0919 putative redox protein.
       0.535
Tlet_0970
Hypothetical protein.
       0.507
Tlet_1473
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: tma:TM1052 comEA protein-related protein.
 
  
 0.483
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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