STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Tlet_0979Rubrerythrin; KEGG: sfu:Sfum_3220 rubrerythrin. (160 aa)    
Predicted Functional Partners:
Tlet_0978
Ferritin Dps family protein; Iron-storage protein.
  
    0.793
Tlet_0980
PFAM: protein of unknown function DUF59; KEGG: tma:TM0487 hypothetical protein.
       0.746
Tlet_0981
TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: tma:TM0488 putative protoporphyrinogen oxidase.
       0.746
Tlet_0977
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.655
Tlet_0982
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0043 ABC transporter, ATP-binding protein.
       0.615
Tlet_0299
KEGG: tma:TM1142 hypothetical protein.
  
     0.551
Tlet_1277
PFAM: protein of unknown function DUF362; KEGG: mba:Mbar_A1412 hypothetical protein.
 
     0.499
Tlet_0770
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0884 methyltransferase, putative.
 
     0.474
Tlet_2044
KEGG: tma:TM1863 hypothetical protein.
  
     0.423
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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