STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1007PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1547 hypothetical protein. (499 aa)    
Predicted Functional Partners:
Tlet_1006
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tma:TM1548 lipopolysaccharide biosynthesis protein.
       0.817
Tlet_1005
PFAM: glycosyl transferase family 4; KEGG: tma:TM1549 methicillin resistance protein.
       0.807
Tlet_2046
PFAM: deoxynucleoside kinase; KEGG: cpr:CPR_0070 deoxynucleoside kinase family protein.
  
 
 
 0.729
Tlet_2047
PFAM: deoxynucleoside kinase; KEGG: cpr:CPR_0070 deoxynucleoside kinase family protein.
  
 
 
 0.728
Tlet_1008
KEGG: tma:TM0469 hypothetical protein.
 
     0.605
Tlet_1009
PFAM: response regulator receiver; KEGG: tma:TM0468 response regulator.
       0.549
Tlet_0946
PFAM: protein of unknown function DUF58; KEGG: tma:TM1133 hypothetical protein.
  
     0.542
Tlet_1010
Protein serine phosphatase with GAF(s) sensor(s); PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tma:TM0467 regulatory protein, putative.
       0.542
Tlet_1015
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.542
Tlet_1016
PFAM: DNA polymerase III alpha subunit; KEGG: tma:TM0461 DNA polymerase III, alpha subunit, putative.
       0.532
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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