STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Tlet_1012KEGG: tma:TM0465 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Tlet_1011
PFAM: protein of unknown function DUF28; KEGG: tma:TM0466 hypothetical protein.
       0.786
Tlet_1013
Protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase CheR-type; Methyltransferase type 11; KEGG: tma:TM0464 putative chemotaxis protein methyltransferase.
       0.786
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.786
Tlet_1015
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.786
Tlet_1016
PFAM: DNA polymerase III alpha subunit; KEGG: tma:TM0461 DNA polymerase III, alpha subunit, putative.
       0.786
Tlet_1008
KEGG: tma:TM0469 hypothetical protein.
       0.752
Tlet_1009
PFAM: response regulator receiver; KEGG: tma:TM0468 response regulator.
       0.752
Tlet_1010
Protein serine phosphatase with GAF(s) sensor(s); PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tma:TM0467 regulatory protein, putative.
       0.752
Tlet_1017
Purine nucleosidase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: cya:CYA_1903 inosine-uridine preferring nucleoside hydrolase family protein.
       0.532
Tlet_1018
PFAM: purine or other phosphorylase family 1; KEGG: cpf:CPF_0375 uridine phosphorylase.
       0.532
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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