STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1029PFAM: glycosidase PH1107-related; KEGG: tma:TM1852 hypothetical protein. (294 aa)    
Predicted Functional Partners:
Tlet_1032
PFAM: extracellular solute-binding protein family 1; KEGG: tma:TM1855 multiple sugar transport system substrate-binding protein.
 
     0.873
Tlet_1031
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1854 multiple sugar transport system permease protein.
 
    0.812
Tlet_1030
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1853 multiple sugar transport system permease protein.
       0.782
Tlet_1033
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM1856 transcriptional regulator, LacI family.
       0.718
Tlet_0084
PFAM: glycosyl transferase family 2; KEGG: tma:TM1229 hypothetical protein.
 
      0.717
Tlet_0636
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: cno:NT01CX_1477 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, putative.
   
  
 0.553
Tlet_1028
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; Acetyl xylan esterase; KEGG: tte:TTE2342 dipeptidyl aminopeptidase/acylaminoacyl-peptidase.
       0.520
Tlet_1848
PFAM: glycoside hydrolase family 20; KEGG: sth:STH304 N-acetyl-beta-hexosaminidase.
 
    0.475
Tlet_1543
PFAM: glycoside hydrolase family 20; KEGG: sth:STH304 N-acetyl-beta-hexosaminidase.
 
    0.458
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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