STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1085PFAM: DegV family protein; KEGG: efa:EF1191 DegV family protein. (275 aa)    
Predicted Functional Partners:
Tlet_2011
PFAM: Dak phosphatase; KEGG: tma:TM1772 hypothetical protein.
 
 0.980
Tlet_1084
PFAM: Acetamidase/Formamidase; KEGG: tma:TM0119 acetamidase, putative.
  
    0.780
Tlet_1083
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tma:TM0508 putative ATPase.
       0.779
Tlet_1081
PFAM: regulatory protein MarR; iron dependent repressor; KEGG: tma:TM0510 iron-dependent transcriptional repressor, putative.
  
    0.746
Tlet_1080
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: tma:TM0511 DNA polymerase, bacteriophage-type.
       0.727
Tlet_1082
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tma:TM0509 UDP-glucose 4-epimerase, putative.
       0.727
Tlet_1086
TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: tte:TTE0477 predicted hydrolases of the HAD superfamily.
       0.457
Tlet_1087
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tma:TM0572 lipopolysaccharide biosynthesis protein, putative; Belongs to the DegT/DnrJ/EryC1 family.
       0.454
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
       0.454
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.454
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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