STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1105PFAM: regulatory protein GntR HTH; GntR domain protein; Helix-turn-helix type 11 domain protein; KEGG: mlo:mll0857 probable transcriptional regulator. (219 aa)    
Predicted Functional Partners:
Tlet_0037
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: swo:Swol_0065 transcriptional regulator, GntR family.
 
  
 0.782
Tlet_0259
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: swo:Swol_0065 transcriptional regulator, GntR family.
 
  
 0.777
Tlet_0078
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: fnu:FN0555 transcriptional regulator, MerR family.
  
  
 0.516
Tlet_1465
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bce:BC4053 transcriptional regulator, GntR family.
  
  
 0.480
Tlet_1689
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: gka:GK2275 transcriptional regulator (GntR family).
  
  
 0.445
Tlet_0191
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bce:BC4053 transcriptional regulator, GntR family.
  
  
 0.444
Tlet_0268
PFAM: protein of unknown function DUF1121; KEGG: tma:TM0152 hypothetical protein.
 
   
 0.437
Tlet_0334
PFAM: regulatory protein GntR HTH; KEGG: ana:alr2226 transcriptional regulator.
  
  
 0.428
Tlet_0221
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: gka:GK2275 transcriptional regulator (GntR family).
  
  
 0.427
Tlet_1864
PFAM: regulatory protein ArsR; transcriptional regulator TrmB; regulatory protein IclR; Transcriptional regulator IclR; KEGG: tma:TM0065 transcriptional regulator, IclR family.
 
  
 0.419
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.