Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tlet_1111PFAM: sugar transferase; KEGG: tma:TM0632 extracellular polysaccharide biosynthesis-related protein. (427 aa)    
Predicted Functional Partners:
Tlet_1906
PFAM: lipopolysaccharide biosynthesis protein; KEGG: tma:TM0644 hypothetical protein.
 
  
 0.969
Tlet_0730
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: tma:TM0818 lipopolysaccharide biosynthesis protein, putative; Belongs to the glycosyltransferase 26 family.
    
 0.770
Tlet_2020
PFAM: regulatory protein MarR; KEGG: gme:Gmet_2889 hypothetical protein.
 
  
 0.715
Tlet_1989
PFAM: polysaccharide export protein; KEGG: tma:TM0638 polysaccharide export protein, putative.
 
  
 0.714
Tlet_1006
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tma:TM1548 lipopolysaccharide biosynthesis protein.
  
 0.712
Tlet_1168
Mannose-1-phosphate guanylyltransferase-like protein; KEGG: tma:TM1033 mannose-1-phosphate guanylyltransferase.
 
  
 0.670
Tlet_1890
PFAM: glycosyl transferase group 1; KEGG: dsy:DSY3337 hypothetical protein.
 
  
 0.669
Tlet_1188
PFAM: polysaccharide biosynthesis protein; KEGG: tma:TM0620 lipopolysaccharide biosynthesis protein.
 
  
 0.660
Tlet_1173
PFAM: glycosyl transferase group 1; KEGG: chy:CHY_1058 glycosyltransferase, group 1 family.
  
 0.640
Tlet_1888
PFAM: glycosyl transferase family 2; KEGG: ctc:CTC02258 succinoglycan biosynthesis protein ExoA.
  
 0.639
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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