STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1147Alpha-N-arabinofuranosidase; PFAM: Carbohydrate-binding CenC domain protein; alpha-L-arabinofuranosidase domain protein; KEGG: cac:CAC3436 probable alpha-arabinofuranosidase. (800 aa)    
Predicted Functional Partners:
Tlet_1146
PFAM: glycoside hydrolase family 10; KEGG: chu:CHU_2105 xylanase; N-terminal CBM4 module, glycoside hydrolase family 10 protein.
 
   
 0.951
Tlet_1144
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0399 sugar ABC transporter permease.
  
    0.783
Tlet_1145
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2724 binding-protein-dependent transport systems inner membrane component.
  
    0.783
Tlet_1148
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: tma:TM0281 alpha-L-arabinofuranosidase.
 
    
0.775
Tlet_1143
PFAM: extracellular solute-binding protein family 1; KEGG: lxx:Lxx23570 ABC transporter, sugar binding protein.
 
    0.737
Tlet_1137
PFAM: Pectate lyase/Amb allergen; KEGG: tma:TM0433 pectate lyase.
 
   
 0.706
Tlet_0913
Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Ig domain protein; glycosyl hydrolase 53 domain protein; KEGG: tma:TM1201 arabinogalactan endo-1,4-beta-galactosidase, putative.
  
  
 0.695
Tlet_0355
PFAM: glycoside hydrolase family 3 domain protein; KEGG: tma:TM0076 beta-glucosidase.
 
   
 0.561
Tlet_0218
PFAM: Glycoside hydrolase family 42 domain protein; KEGG: sus:Acid_7597 beta-galactosidase.
 
  
 0.530
Tlet_1149
PFAM: L-fucose isomerase domain protein; KEGG: tma:TM0951 hypothetical protein.
       0.513
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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