STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1244PFAM: periplasmic binding protein; KEGG: ttj:TTHA0723 iron(III) ABC transporter, solute-binding protein. (248 aa)    
Predicted Functional Partners:
Tlet_1250
PFAM: transport system permease protein; KEGG: tde:TDE1179 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.919
Tlet_1251
PFAM: periplasmic binding protein; KEGG: bat:BAS4441 iron compound ABC transporter, iron compound-binding protein.
 
     0.890
Tlet_1249
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1448 ferric enterobactin transport ATP-binding protein FepC.
 
 
 0.886
Tlet_1274
PFAM: transport system permease protein; ABC-3 protein; KEGG: tma:TM0079 putative iron(III) transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.840
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
    0.778
Tlet_1245
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pca:Pcar_1364 glucose 1-dehydrogenase.
  
 
 0.775
Tlet_1273
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0078 putative iron(III) transport system ATP-binding protein.
 
 
 0.738
Tlet_1749
KEGG: tma:TM1266 hypothetical protein.
  
 
 0.664
Tlet_1248
KEGG: tde:TDE1177 flavodoxin family protein.
  
  
 0.630
Tlet_1247
Coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tde:TDE1176 oxygen-independent coproporphyrinogen III oxidase, putative.
     
 0.608
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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