STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1304TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: tma:TM0047 transposase, putative. (406 aa)    
Predicted Functional Partners:
Tlet_1407
PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase.
 
   
 0.784
Tlet_0018
KEGG: pha:PSHAb0292 putative HNH endonuclease.
  
    0.733
Tlet_0102
Hypothetical protein; KEGG: pha:PSHAb0292 putative HNH endonuclease.
  
    0.724
Tlet_1723
Hypothetical protein; KEGG: pha:PSHAb0292 putative HNH endonuclease.
  
    0.718
Tlet_1302
TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: dsy:DSY0233 hypothetical protein; Belongs to the arginase family.
  
    0.659
Tlet_1303
SMART: AAA ATPase; KEGG: bfs:BF0909 putative helicase protein.
       0.648
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
    
   0.621
Tlet_0106
PFAM: protein of unknown function DUF187; KEGG: cyb:CYB_0076 hypothetical protein.
  
     0.529
Tlet_1305
4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: ppd:Ppro_2655 extracellular solute-binding protein, family 5.
       0.482
Tlet_0463
PFAM: ABC-2 type transporter; KEGG: tma:TM1100 putative ABC-2 type transport system permease protein.
  
     0.401
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.