STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1502PFAM: protein of unknown function DUF917; KEGG: tpe:Tpen_1347 protein of unknown function DUF917. (367 aa)    
Predicted Functional Partners:
Tlet_1501
KEGG: pho:PH1046 hypothetical protein.
 
     0.913
Tlet_1507
PFAM: extracellular solute-binding protein family 5; KEGG: drm:Dred_0389 extracellular solute-binding protein, family 5.
 
     0.817
Tlet_1506
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_0390 binding-protein-dependent transport systems inner membrane component.
 
     0.754
Tlet_1504
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pab:PAB0094 dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.744
Tlet_1503
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tpe:Tpen_1249 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
       0.741
Tlet_1505
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein.
       0.741
Tlet_0077
PFAM: protein of unknown function DUF1177; KEGG: pho:PH1050 hypothetical protein.
 
     0.683
Tlet_0070
PFAM: AroM family protein; KEGG: pho:PH1049 AroM protein.
 
     0.681
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.519
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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