STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1506PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_0390 binding-protein-dependent transport systems inner membrane component. (339 aa)    
Predicted Functional Partners:
Tlet_1505
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein.
    0.955
Tlet_1507
PFAM: extracellular solute-binding protein family 5; KEGG: drm:Dred_0389 extracellular solute-binding protein, family 5.
   0.950
Tlet_1503
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tpe:Tpen_1249 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
  
 0.832
Tlet_0200
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_2452 binding-protein-dependent transport systems inner membrane component.
    0.825
Tlet_0855
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bhe:BH12160 ABC transporter, permease protein.
    0.825
Tlet_1686
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bat:BAS4391 oligopeptide ABC transporter, oligopeptide-binding protein.
    0.822
Tlet_1932
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1153 putative oligopeptide transport system permease protein.
    0.822
Tlet_0073
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0566 oligopeptide ABC transporter permease.
    0.821
Tlet_1504
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pab:PAB0094 dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    0.807
Tlet_1501
KEGG: pho:PH1046 hypothetical protein.
 
     0.784
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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