STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1560PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0765 putative ABC-2 type transport system ATP-binding protein. (260 aa)    
Predicted Functional Partners:
Tlet_1561
KEGG: tma:TM0764 putative ABC-2 type transport system permease protein.
  
 
 0.883
Tlet_1559
PFAM: regulatory protein GntR HTH; KEGG: tma:TM0766 transcriptional regulator, GntR family.
  
  
 0.851
Tlet_1562
KEGG: tma:TM0336 hypothetical protein.
       0.786
Tlet_1320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0705 ABC transporter, ATP-binding protein.
  
0.686
Tlet_1353
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0339 putative sulfonate transport system ATP-binding protein.
  
    0.675
Tlet_0808
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0352 ABC transporter, ATP-binding protein.
  
0.605
Tlet_0552
PFAM: ABC-2 type transporter; KEGG: tma:TM0387 putative ABC-2 type transport system permease protein.
 
  
 0.541
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
    0.475
Tlet_1235
PFAM: ABC-2 type transporter; KEGG: tde:TDE0701 hypothetical protein.
 
  
 0.462
Tlet_1557
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: fnu:FN0495 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.461
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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