STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1791PFAM: ABC-2 type transporter; KEGG: oih:OB1023 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Tlet_1792
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB1022 ABC transporter ATP-binding protein.
 
     0.943
Tlet_1561
KEGG: tma:TM0764 putative ABC-2 type transport system permease protein.
  
 
 0.708
Tlet_0875
PFAM: peptidase M28; KEGG: pab:PAB0027 hypothetical protein.
  
     0.613
Tlet_1795
PFAM: phosphatidate cytidylyltransferase; KEGG: tma:TM1397 phosphatidate cytidylyltransferase; Belongs to the CDS family.
 
     0.568
nfo
Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.563
Tlet_1790
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: tma:TM0363 fibronectin-binding protein, putative.
  
    0.563
Tlet_1041
PFAM: ABC-2 type transporter; KEGG: rxy:Rxyl_0406 ABC-2 type transporter.
 
  
 0.557
Tlet_0890
PFAM: major facilitator superfamily MFS_1; KEGG: bha:BH3482 multidrug-efflux transporter.
  
   
 0.521
Tlet_1794
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.521
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.501
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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