STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
Tlet_1816PFAM: ATPase; KEGG: pab:PAB1597 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Tlet_0875
PFAM: peptidase M28; KEGG: pab:PAB0027 hypothetical protein.
  
     0.694
Tlet_1844
PFAM: extracellular solute-binding protein family 1; KEGG: pho:PH1039 multiple sugar transport system substrate-binding protein.
  
     0.689
Tlet_0946
PFAM: protein of unknown function DUF58; KEGG: tma:TM1133 hypothetical protein.
  
     0.684
Tlet_1336
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: tma:TM1021 permease, putative.
  
     0.620
Tlet_0089
PFAM: extracellular solute-binding protein family 1; KEGG: tma:TM1235 multiple sugar transport system substrate-binding protein.
  
     0.603
Tlet_0404
PFAM: extracellular solute-binding protein family 1; KEGG: rxy:Rxyl_0621 extracellular solute-binding protein, family 1.
  
     0.586
Tlet_1817
KEGG: tma:TM0671 M-related protein.
       0.542
Tlet_0084
PFAM: glycosyl transferase family 2; KEGG: tma:TM1229 hypothetical protein.
  
     0.528
Tlet_0019
PFAM: L-fucose isomerase domain protein; L-fucose isomerase _1 domain protein; L-fucose isomerase _2 domain protein; KEGG: tma:TM0307 L-fucose isomerase, putative.
  
     0.474
Tlet_1843
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pho:PH1038 multiple sugar transport system permease protein.
  
     0.452
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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