STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1876PFAM: protein of unknown function DUF112 transmembrane; KEGG: csa:Csal_0289 protein of unknown function DUF112, transmembrane. (499 aa)    
Predicted Functional Partners:
Tlet_1874
PFAM: Uncharacterized protein UPF0065; KEGG: oih:OB3234 hypothetical protein.
 
  
 0.952
Tlet_0633
PFAM: protein of unknown function DUF112 transmembrane; KEGG: csa:Csal_1753 protein of unknown function DUF112, transmembrane.
  
  
 
0.912
Tlet_1454
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ecv:APECO1_2629 hypothetical protein.
  
  
 
0.909
Tlet_0040
PFAM: Uncharacterized protein UPF0065; KEGG: bld:BLi01241 putative tricarboxylic transport membrane protein.
  
 0.889
Tlet_0635
PFAM: Uncharacterized protein UPF0065; KEGG: bja:bll3051 hypothetical protein.
  
 0.889
Tlet_1456
PFAM: Uncharacterized protein UPF0065; KEGG: vei:Veis_3545 uncharacterized protein UPF0065.
  
 0.889
Tlet_1877
PFAM: oxidoreductase domain protein; KEGG: bja:bll6448 hypothetical protein.
       0.789
Tlet_1881
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: tma:TM0065 transcriptional regulator, IclR family.
  
    0.751
Tlet_1879
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mja:MJ0033 succinate dehydrogenase flavoprotein subunit.
       0.744
Tlet_1875
KEGG: oih:OB3248 hypothetical protein.
       0.737
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.