STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1920PFAM: protein of unknown function DUF125 transmembrane; KEGG: tma:TM0497 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Tlet_1918
PFAM: Linocin_M18 bacteriocin protein; KEGG: mxa:MXAN_3556 hypothetical protein.
 
     0.648
Tlet_1028
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; Acetyl xylan esterase; KEGG: tte:TTE2342 dipeptidyl aminopeptidase/acylaminoacyl-peptidase.
 
      0.550
Tlet_1919
KEGG: cth:Cthe_1503 hypothetical protein.
       0.518
purH
TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; KEGG: bca:BCE_0327 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase.
 
     0.408
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
     
 0.401
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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