STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_2000PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0770 hypothetical protein. (599 aa)    
Predicted Functional Partners:
Tlet_1998
Hypothetical protein.
       0.789
Tlet_1999
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: tma:TM0590 penicillin-binding protein 2.
       0.789
Tlet_2001
PFAM: Abortive infection protein; KEGG: tma:TM1098 hypothetical protein.
  
    0.786
Tlet_1996
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tpe:Tpen_1575 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.773
Tlet_1997
Conserved hypothetical integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.773
Tlet_1008
KEGG: tma:TM0469 hypothetical protein.
 
    0.765
Tlet_1995
PFAM: GCN5-related N-acetyltransferase; KEGG: tma:TM1178 acetyltransferase-related protein.
       0.749
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.698
Tlet_1992
PFAM: NUDIX hydrolase; KEGG: tma:TM1181 ADP-ribose pyrophosphatase.
       0.694
Tlet_1993
KEGG: tma:TM1180 hypothetical protein.
       0.694
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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