STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_2002Hypothetical protein. (119 aa)    
Predicted Functional Partners:
Tlet_2003
Hypothetical protein.
       0.786
Tlet_2004
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0500 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.786
Tlet_2006
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0178 oligopeptide transport permease protein.
       0.786
Tlet_2005
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pho:PH1959 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.784
Tlet_2007
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0532 putative oligopeptide transport system permease protein.
       0.773
Tlet_2008
PFAM: extracellular solute-binding protein family 5; KEGG: bld:BLi01226 oligopeptide ABC transporter (oligopeptide-binding protein); RBL00623.
       0.554
Tlet_2009
Glycine C-acetyltransferase; PFAM: aminotransferase class I and II; KEGG: tte:TTE2406 7-keto-8-aminopelargonate synthetase and related enzymes.
       0.408
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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