STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_2004TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0500 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (389 aa)    
Predicted Functional Partners:
Tlet_2006
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0178 oligopeptide transport permease protein.
   0.897
Tlet_2024
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.
 
   0.882
Tlet_1932
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1153 putative oligopeptide transport system permease protein.
 
   0.876
Tlet_1440
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1221 putative oligopeptide transport system permease protein.
 
   0.862
Tlet_2007
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0532 putative oligopeptide transport system permease protein.
 
   0.860
Tlet_0200
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_2452 binding-protein-dependent transport systems inner membrane component.
 
   0.845
Tlet_2005
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pho:PH1959 putative oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.824
Tlet_0855
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bhe:BH12160 ABC transporter, permease protein.
 
   0.790
Tlet_1308
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rxy:Rxyl_0874 binding-protein-dependent transport systems inner membrane component.
   0.788
Tlet_2002
Hypothetical protein.
       0.786
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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