STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ps101Phage integrase; DNA breaking-rejoining enzyme, catalytic core, Tyrosine recombinase xerD; Conserved hypothetical protein; Belongs to the 'phage' integrase family. (394 aa)    
Predicted Functional Partners:
matR
Maturase; Multifunctional protein that promotes group II intron splicing and mobility by acting both on RNA and DNA. It has three activities: reverse transcriptase (RT) for intron duplication, maturase to promote splicing, and DNA endonuclease for site-specific cleavage of recipient alleles. The intron-encoded protein promotes splicing by facilitating the formation of the catalytically active structure of the intron RNA. After splicing, the protein remains bound to the excised intron lariat RNA, forming ribonucleoprotein particles, and cleaving the antisense strand of the recipient DNA [...]
   
  
 0.750
ps517
Putative Dna Primase; PF03288: Poxvirus D5 protein-like, TIGR01613: phage/plasmid primase, P4 family, C-terminal domain; Conserved hypothetical protein.
 
     0.513
ps126
Putative DNA primase; Similar to ps105 from IL1403, Phage associated; Family membership.
 
     0.508
ps610
Conserved hypothetical protein; Similar to prophage ps105 in L. lactis IL1403, Putative DNA primase, PF03288: Poxvirus D5 protein-like.
 
     0.507
ps102
Hypothetical protein, phage associated; Similar to lciA, Lactococcin A immunity protein; Conserved hypothetical protein.
       0.422
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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