STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmGRibosomal protein L33; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)    
Predicted Functional Partners:
pcaC
Carboxymuconolactone decarboxylase family; High confidence in function and specificity.
      
 0.960
rpmF
Ribosomal L32p protein; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.949
rpmGA
50S ribosomal protein L33 type 2; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family.
  
  
  0.924
cbiQ
Putative cobalt ABC transporter permease protein; High confidence in function and specificity.
      
 0.907
rpmGC
50S ribosomal protein L33; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.903
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 
 0.900
rpsI
PF00380: Ribosomal protein S9/S16; High confidence in function and specificity; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.831
rpmB
Ribosomal protein L28; Conserved hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.826
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.823
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.822
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.