STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgpBRhamnosyltransferase RgpB; Glycosyl transferase, family 2, putative polysaccharide synthesis protein; High confidence in function and specificity. (313 aa)    
Predicted Functional Partners:
rgpA
Rhamnosyltransferase RgpA; Putative polysaccharide biosynthesis protein; High confidence in function and specificity.
 
  
 0.994
rgpF
alpha-L-Rha alpha-1,2-L-rhamnosyltransferase RgpF; Rhamnan synthesis protein F, polysaccharide biosynthesis protein; High confidence in function and specificity.
 
  
 0.993
rgpC
Capsule polysaccharide export inner-membrane protein RgpC; ABC-2 type transporter; Conserved hypothetical protein.
 
  
 0.991
rgpE
Glycosyltransferase RgpE; Glycosyl transferase, family 2; High confidence in function and specificity.
 
   
 0.979
rgpD
Polysaccharide ABC transporter ATP-binding protein RgpD; High confidence in function and specificity.
 
 
 
 0.933
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.919
tnp1077-6
Pseudogene; Transposase for insertion sequence IS1077G (fragment), Integrase, catalytic region; Conserved hypothetical protein.
  
  
 0.888
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.866
rmlC
dTDP-4-keto-6-deoxyglucose-3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase, dTDP-4-keto-6-deoxyglucose 3,5-epimerase, dTDP-L-rhamnose synthetase; High confidence in function and specificity.
 
  
 0.786
llmg_1617
Conserved hypothetical protein; Glycosyl transferase, group 2 family protein, Glycosyltransferases involved in cell wall biogenesis; Family membership.
  
     0.758
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.