STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_0218Glycosyl transferase, family 2; High confidence in function and specificity. (245 aa)    
Predicted Functional Partners:
llmg_0220
Glycosyl transferase, family 2; Conserved hypothetical protein.
 
     0.835
llmg_0219
Putative membrane protein.
     
 0.806
rgpC
Capsule polysaccharide export inner-membrane protein RgpC; ABC-2 type transporter; Conserved hypothetical protein.
 
  
 0.697
wefC
Conserved hypothetical protein.
  
    0.691
llmg_0221
Glycosyl transferase, family 2; Conserved hypothetical protein.
  
    0.671
rgpD
Polysaccharide ABC transporter ATP-binding protein RgpD; High confidence in function and specificity.
 
   0.663
rgpA
Rhamnosyltransferase RgpA; Putative polysaccharide biosynthesis protein; High confidence in function and specificity.
  
  
 0.628
rgpF
alpha-L-Rha alpha-1,2-L-rhamnosyltransferase RgpF; Rhamnan synthesis protein F, polysaccharide biosynthesis protein; High confidence in function and specificity.
  
  
 0.627
rgpB
Rhamnosyltransferase RgpB; Glycosyl transferase, family 2, putative polysaccharide synthesis protein; High confidence in function and specificity.
  
    0.594
llmg_0215
Putative membrane protein.
     
 0.578
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.