STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbXPutative O-antigen transporter; Polysaccharide biosynthesis protein; Family membership. (472 aa)    
Predicted Functional Partners:
llmg_0223
Putative galactofuranose transferase.
 
  
 0.952
glf1
Glf1 protein; High confidence in function and specificity.
 
  
 0.952
wefC
Conserved hypothetical protein.
 
  
 0.779
rmlB
[EC:4.2.1.46], dTDP-glucose 4,6-dehydratase, NAD dependent epimerase/dehydratase family, dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.703
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.698
rmlC
dTDP-4-keto-6-deoxyglucose-3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase, dTDP-4-keto-6-deoxyglucose 3,5-epimerase, dTDP-L-rhamnose synthetase; High confidence in function and specificity.
  
  
 0.698
llmg_0226
Possible surface protein.
       0.695
llmg_0227
Putative membrane protein.
       0.694
llmg_0228
Putative membrane protein.
       0.686
rgpA
Rhamnosyltransferase RgpA; Putative polysaccharide biosynthesis protein; High confidence in function and specificity.
 
  
 0.663
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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