STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnDPhosphonate ABC transporter, phosphonate-binding protein phnD. (349 aa)    
Predicted Functional Partners:
phnC
Phosphonates import ATP-binding protein phnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.999
phnB
Phosphonate transport system permease protein phnB; High confidence in function and specificity.
 
 
 0.991
llmg_0315
Phosphonate ABC transporter permease protein; Region start changed from 300786 to 300798 (-12 bases).
 
 
 0.990
pcaC
Carboxymuconolactone decarboxylase family; High confidence in function and specificity.
      
 0.901
rpmGA
50S ribosomal protein L33 type 2; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family.
      
 0.843
cpdC
2',3'-cyclic-nucleotide 2'-phosphodiesterase; High confidence in function and specificity; Belongs to the 5'-nucleotidase family.
 
     0.831
rpmG
Ribosomal protein L33; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family.
      
 0.762
cbiQ
Putative cobalt ABC transporter permease protein; High confidence in function and specificity.
      
 0.751
rpmGC
50S ribosomal protein L33; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family.
      
 0.636
llmg_0311
Conserved hypothetical protein.
       0.405
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.