STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpECation-transporting ATPase, E1-E2 family; ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase; High confidence in function and specificity. (775 aa)    
Predicted Functional Partners:
pepM
PepM protein; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
     
 0.880
llmg_0548
Hypothetical protein predicted by Glimmer/Critica.
       0.668
xylH
[EC:5.3.2.-], 4-oxalocrotonate tautomerase, Tautomerase enzyme; Conserved hypothetical protein.
       0.497
llmg_0875
Cation-transporting ATPase; MgtC/SapB family protein; Family membership.
  
 
 0.484
eriC
Putative chloride channel protein; High confidence in function and specificity.
  
 
 0.426
trmH
23S ribosomal RNA methyltransferase, TrmH family; High confidence in function and specificity; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
      0.409
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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