STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmGA50S ribosomal protein L33 type 2; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family. (48 aa)    
Predicted Functional Partners:
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.969
pcaC
Carboxymuconolactone decarboxylase family; High confidence in function and specificity.
      
 0.960
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
 
 0.954
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.928
rpmG
Ribosomal protein L33; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family.
  
  
  0.924
rpmGC
50S ribosomal protein L33; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.924
cbiQ
Putative cobalt ABC transporter permease protein; High confidence in function and specificity.
      
 0.912
rpmB
Ribosomal protein L28; Conserved hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.861
rpsI
PF00380: Ribosomal protein S9/S16; High confidence in function and specificity; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.853
phnD
Phosphonate ABC transporter, phosphonate-binding protein phnD.
      
 0.843
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.